Sri Lanka declared a state of emergency after President Rajapaksa and his wife fled to the Maldives hours before he was due to resign. Protesters also stormed the prime minister's office, calling for his resignation.
Earlier on Wednesday, an immigration official said the president and his wife, along with two bodyguards, left the country in a Sri Lankan Air Force plane. The aircraft landed in the Maldivian capital of Male, a government source said. This was later confirmed by the Sri Lanka Air Force.
The early morning escape of the president follows months of protests in the island nation, which has been battling a severe economic crisis, and culminated in protesters storming the official residences of the president and the prime minister on Saturday.
The display of public anger forced Rajapaksa to go into hiding and led to him agreeing to step down on Wednesday clearing the way for a "peaceful transition of power."
Rajapaksa is facing several criminal charges and it is believed he left the country before stepping down and losing his presidential immunity.